Package: R2BayesX 1.1-5

R2BayesX: Estimate Structured Additive Regression Models with 'BayesX'

An R interface to estimate structured additive regression (STAR) models with 'BayesX'.

Authors:Nikolaus Umlauf [aut, cre], Thomas Kneib [aut], Stefan Lang [aut], Achim Zeileis [aut]

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R2BayesX.pdf |R2BayesX.html✨
R2BayesX/json (API)

# Install 'R2BayesX' in R:
install.packages('R2BayesX', repos = c('https://freezenik.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.50 score 1 stars 1 packages 105 scripts 966 downloads 15 mentions 42 exports 6 dependencies

Last updated 1 years agofrom:dc85b90caf. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 07 2024
R-4.5-win-x86_64OKNov 07 2024
R-4.5-linux-x86_64OKNov 07 2024
R-4.4-win-x86_64OKNov 07 2024
R-4.4-mac-x86_64OKNov 07 2024
R-4.4-mac-aarch64OKNov 07 2024
R-4.3-win-x86_64OKNov 07 2024
R-4.3-mac-x86_64OKNov 07 2024
R-4.3-mac-aarch64OKNov 07 2024

Exports:add.neighborbayesxbayesx_logfilebayesx_prgfilebayesx_runtimebayesx.constructbayesx.controlbayesx.term.optionsbnd2grabnd2spbxoptscolorlegendcprobdelete.neighborDICdrawmapGCVget.neighborgetscriptgra2nbGRstatsnb2graparse.bayesx.inputplot2dplot3dplotblockplotmapplotnonpplotsamplesplotsurfread.bayesx.outputread.bndread.grasamplesshp2bndsliceplotsp2bndsxterm.freqswrite.bayesx.inputwrite.bndwrite.gra

Dependencies:BayesXsrccolorspacelatticeMatrixmgcvnlme

Readme and manuals

Help Manual

Help pageTopics
Estimate STAR Models with BayesXR2BayesX-package r2bayesx-package R2BayesX r2bayesx
Add Neighborhood Relationsadd.neighbor
Estimate STAR Models with BayesXbayesx
BayesX Log-Filesbayesx_logfile logfile
BayesX Program-Filesbayesx_prgfile prgfile
BayesX Program-Runtimesbayesx_runtime runtime
Construct BayesX Model Term Objectsbayesx.construct bayesx.construct.bl.smooth.construct bayesx.construct.factor.smooth.construct bayesx.construct.gk.smooth.construct bayesx.construct.gs.smooth.construct bayesx.construct.kr.smooth.construct bayesx.construct.lasso.smooth.construct bayesx.construct.mrf.smooth.construct bayesx.construct.nigmix.smooth.construct bayesx.construct.ps.smooth.construct bayesx.construct.ra.smooth.construct bayesx.construct.re.smooth.construct bayesx.construct.ridge.smooth.construct bayesx.construct.rw1.smooth.construct bayesx.construct.rw2.smooth.construct bayesx.construct.season.smooth.construct bayesx.construct.t2.smooth.construct bayesx.construct.te.smooth.construct bayesx.construct.tensor.smooth.construct
Control Parameters for BayesXbayesx.control
Show BayesX Term Optionsbayesx.term.options bxopts
Beech Location MapBeechBnd
Beech Neighborhood InformationBeechGra
Convert Boundary Format to Graph Formatbnd2gra
Plot a Color Legendcolorlegend
Extract Contour Probabilitiescprob
Delete Neighborhood Relationsdelete.neighbor
Deviance Information CriterionDIC DIC.bayesx
Fantasy MapFantasyBnd
Extract BayesX Fitted Values and Residualsfitted.bayesx residuals.bayesx
Forest Health Dataforest ForestHealth
GAM Artificial Data SetGAMart gamart
Gerneralized Cross Validation CriterionGCV GCV.bayesx
Germany MapGermanyBnd
Obtain Neighbors of Given Regionsget.neighbor
Generate an executable R fitted model scriptgetscript
Compute Gelman and Rubin's convergence diagnostics from multicore BayesX models.GRstats
Convert nb and gra format into each othergra2nb nb2gra
Convert sp and bnd format into each otherbnd2sp sp2bnd
Munich MapMunichBnd
Parse BayesX Inputparse.bayesx.input
Default BayesX Plottingplot.bayesx
2D Effect Plotplot2d plotnonp
3D Effect Plotplot3d plotsurf
Factor Variable and Random Effects Plotsplotblock
Plot Mapsdrawmap plot.bnd plotmap
Plot Sampling Path(s) of Coefficient(s) and Variance(s)plotsamples
Prediction from fitted BayesX objectspredict.bayesx
Read BayesX Output from Directoriesread.bayesx.output
Read Geographical Information in Boundary Formatread.bnd
Read Geographical Information in Graph Formatread.gra
Extract Samples of Coefficients and Variancessamples
convert a shape-file into a boundary objectshp2bnd
Plot Slices of Bivariate Functionssliceplot
Bayesx Summary Statisticssummary.bayesx
Construct BayesX Model Terms in A Formulasx
Extract model term selection frequencies.term.freqs
Write the BayesX Programwrite.bayesx.input
Saving Maps in Boundary Formatwrite.bnd
Saving Maps in Graph Formatwrite.gra
Zambia MapZambiaBnd
Determinants of Childhood Malnutrition in Zambiazambia ZambiaNutrition